NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373959_0007184

Scaffold Ga0373959_0007184


Overview

Basic Information
Taxon OID3300034820 Open in IMG/M
Scaffold IDGa0373959_0007184 Open in IMG/M
Source Dataset NamePopulus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1869
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia, United States
CoordinatesLat. (o)39.6589Long. (o)-79.9058Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028921Metagenome190N
F045320Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0373959_0007184_1508_1840F028921N/AMGGTITRPCPPVGPASFRERAPDSSRSLEQVNAYELTIHGLDDAASFATARWELFIFPEVQALAPGSAKDRFVVFYEGDSADPTAWCRALSATGHPATPVGPVLETGEAA
Ga0373959_0007184_2_193F045320N/AATTARERQSLQWELSACDQVRGVFVTARDDVLAVLFDGDRWTFDSFIRTLQPDLTTYRKGALQ
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