Scaffold Ga0373959_0002078

Overview

Basic Information

• Taxon OID: 3300034820
• Scaffold ID: Ga0373959_0002078
• Source Dataset Name: Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3195
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus davidiana (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location

• Location Name: USA: West Virginia, United States
• Coordinates
  • Lat. (^o): 39.6589
  • Long. (^o): -79.9058
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010402	Metagenome	304	Y
F095761	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0373959_0002078_1744_1968	F010402	GAG	MRRHVKVIMVVDRDEEEHVTHVYPITCAELLSGENFNCLEGRQNWDTLDTQSSGQFEVESGNLMKTNLDKSKNW
Ga0373959_0002078_984_1142	F095761	GAG	VQREEEFLDEAQSRDYVKKLYNRKSLVLLIKATSEDLSNACKDGKMSYCRST