NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373958_0063795

Scaffold Ga0373958_0063795


Overview

Basic Information
Taxon OID3300034819 Open in IMG/M
Scaffold IDGa0373958_0063795 Open in IMG/M
Source Dataset NamePopulus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)803
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia, United States
CoordinatesLat. (o)39.6589Long. (o)-79.9058Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021024Metagenome220Y

Sequences

Protein IDFamilyRBSSequence
Ga0373958_0063795_2_175F021024N/ALKISSSAVEQVFEDDFGNSRYSVFVHCFRAISNVCALKMTASTVELGLLDDFWVPWS
Ga0373958_0063795_579_803F021024N/AMIFGSLGPSFPQRFWASNSLSTLKISSSAVELVFEDDFGNSRYSVFVHCFRAISSLCALKMSASAEELGFLDDFW

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