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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034818 Open in IMG/M |
| Scaffold ID | Ga0373950_0000059 Open in IMG/M |
| Source Dataset Name | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 69707 |
| Total Scaffold Genes | 66 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: West Virginia, United States | |||||||
| Coordinates | Lat. (o) | 39.6589 | Long. (o) | -79.9058 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F026424 | Metagenome / Metatranscriptome | 198 | N |
| F035981 | Metagenome / Metatranscriptome | 171 | N |
| F078336 | Metagenome | 116 | Y |
| F084521 | Metagenome | 112 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0373950_0000059_26918_27376 | F078336 | GGAGG | MSFYESGVTDVGRILSVLSPSAIKQEIDSIDRYIQRIDHDVQTHKARLSDLLQDWHLFVEDWTAFRDGAGWFARTTGATYDKALDYRKRADAWDELIGRRGASTAPVGTTPAPAPKSDFLGPFLKLAGLGIAAYVGVNLLRTYRKTGEAHEH |
| Ga0373950_0000059_31495_32079 | F035981 | AGG | MRDDDSSGDEILGADEILGADEILGADEILAGDDSSGDDSSGDEVGLRLFRRRKKGAPKKLDPIVQSRLSQSGVVVKTQGYSKGRSQSLGFESLAIQPGTTVDVQANPQVLFKPKRLVYTGPATTFVIQDVKIGRSSQFVASGPQSADAYPPTSTVDNMELDTARPGVVITLRIQNISGVAGDFRATMFGQVAE |
| Ga0373950_0000059_32169_32621 | F026424 | GGAGG | MMNLSLEQVKKFGSEIQALKTRHEKAIDKANDVIEQGVDATLASATAFGLGVWQTRSDHQKLLGVPVDLAVGLAAHAAGFMGMGGKAAPYLHSVGNGALSAHFHTVGRGVGKDLREKAGLPPIAMGGEGPAEGGSNLSDEALLEMARRRG |
| Ga0373950_0000059_39278_39502 | F084521 | GGAGG | VIGELVYSVEVAVVRCPVDGEGGANPGPTETPAAVRYCDVCRRWGTTGSTHLCGRNWHRRLSDLLIALAHEVRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |