NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0373948_0059629

Scaffold Ga0373948_0059629


Overview

Basic Information
Taxon OID3300034817 Open in IMG/M
Scaffold IDGa0373948_0059629 Open in IMG/M
Source Dataset NamePopulus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)836
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil → Populus Rhizosphere Microbial Communities From Soil In West Virginia And Oregon, United States

Source Dataset Sampling Location
Location NameUSA: West Virginia, United States
CoordinatesLat. (o)39.6589Long. (o)-79.9058Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009097Metagenome / Metatranscriptome323Y
F058905Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0373948_0059629_349_675F009097GAGMRKWIGAFSLVWLLWSDLSIVAKDNPLDTFVLRWLARVPRLQTDRIVAGSYSTADDCKAALERHIATLKAINDSWSAEEFARDGDSGTIHYYPRGLEYARADLRCAEQ
Ga0373948_0059629_59_340F058905N/AVRQLRSRLETLEGEQEQLRAELAVLRGEAEVYDGPPSIFVTGWFRATLVLIVLAIVVVVTVPWLMDLFEGGPREPRPPVRTDAPAGTPIPPGR
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