Scaffold Ga0370516_051356

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370516_051356

Scaffold Ga0370516_051356

Overview

Basic Information
Taxon OID	3300034696 Open in IMG/M
Scaffold ID	Ga0370516_051356 Open in IMG/M
Source Dataset Name	Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1442
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5324	Long. (^o)	-110.7974	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370516_051356_234_650	F100012	AGGAGG	MVMDREKVLQALREAQAEYDIKDLDRLVREAWEEGDVLYAEIVVDLIERAVEILFNQHFLWVHIIESEDCEEWAPDGWYSFVAVHPETGQCLTFFNDPVHRRKSANFRARIRNADDAVDAVARLAELIEQNLKSRAVE
Ga0370516_051356_659_1117	F069506	GAG	MEVMSMQLEQQTFTEEQIKQAIEEVWQELLQETDAENYSLEEYLEDYRKYWDDTCFPNDIPELIMRTVEKIIGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVYYEDIVRLVTKLLNQIQSALAAA

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