Scaffold Ga0370516_016455

Overview

Basic Information

• Taxon OID: 3300034696
• Scaffold ID: Ga0370516_016455
• Source Dataset Name: Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2893
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5324
  • Long. (^o): -110.7974

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370516_016455_1797_2396	F038745	N/A	MDKAVAVCGELMQLSLAFSAYYPLCTCGPLCAYAGAVERFIHHIRNAAFTRRAEELVELINSRVRLEELGLPNPALEALTEELGPEPPWLDALAASFFRLYLGLHRRRRIDGRDLALVLCIWAQKRHREDPRNPLWRAAELKPDRLYTEEEARDVLEVQDVVFRRLWRRAQIFYRNEKAYGFQLILAALSLMAAPPRSV
Ga0370516_016455_2427_2783	F051572	GAG	MSRKHNGPFTEVLILADFVLASCKKSAQFLAAYSNLCILAALIKTAPAGTMIWLRPEIAKKLLEELADAAGQNREKMRIALLKKTGELMAQLRQSMGNGVPAEALLAKLTELFLRELA