Scaffold Ga0370516_003832

Overview

Basic Information

• Taxon OID: 3300034696
• Scaffold ID: Ga0370516_003832
• Source Dataset Name: Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6580
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5324
  • Long. (^o): -110.7974

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007033	Metagenome / Metatranscriptome	359	Y
F023603	Metagenome / Metatranscriptome	209	N
F038584	Metagenome / Metatranscriptome	165	Y
F044249	Metagenome / Metatranscriptome	154	N
F068874	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370516_003832_1116_1922	F068874	N/A	VFGRLRRILRFYERVELPDVPAQAQALSYGGRTIVSYPPSPAWAVREPLWLGRRGLGIYAPSTAKMKRKLGLPDREIVLFQTGKLYASIQVLNMKKYYLIRVRRDKLFYIIRRFPVERWLRVDASAVRAGIGKAILAALLGCAPLKKNKAVQSVEVAVRREEVVAHETLRLTTLLNDTIYLRNERLVIHYDTIHQKLRIEQVRPVVVVRDSVIRWNAVVQAPSWVAEKQGEEGMSWWKRWGRGVFALILGLGFLAFVGYLWLKALRIG
Ga0370516_003832_1926_2633	F007033	N/A	LITPILYNVESERPEAVFEELSGTKFFVRHQPRTFKALVVKPPTEWGINIEQFRCVSRLGVFLIDDAGVVCGRRVSLIKAAPIPIEPGTVQVRLLFPSDTTITKYEFSFDFAQSLMDFELVPVFADAGLLNYTPGIAARLTVRWRPPALIASVYALYSRGTGDFYIPITGLAAYLELRNNANTLITANFTEVSPGIYESDPLTLSPSGNPYTIRVGASTPADAFDYTTAVAQFNV
Ga0370516_003832_3377_3772	F044249	GAGG	MTKREAILALLGASLTVVAQKYAMVLAALIVLGALANFLGWLHAMISEEGCKPAKVLQGTARLVFYMVFYVVLLVALEQVASYLIPPLLSVAILYEASLALKKAVQLNIIPAGLVRQLTKVFHREPSEKAS
Ga0370516_003832_3954_5009	F038584	N/A	MTEEIKQIQKAAEELTATLHATAATEEETKTLDAISKAAAHIRQQLRDRMPNAGTRIKISELRAARRLMRRYVQKTTVGTNLPREYIGEAFYVIRQPVIEFIQDYLRTETLEVLSEITQVRLNPFTGSPSTVGEGGVKPTMSTTPQRVNSNYQKISFTDVITDEVLLAYPNIVDFLIWHGAYQLEVTLHNALLTVLASVASAATLPTGITSPQVADLLIYMRAFHDQRSAISRRGEWIANIAIVPFPYYWTLVFGALKSTMGEYLQLDRQLQGLSLIPAGTTQTDPTIVLNENELEVFFLGDITVNFERVVDAASDTNVRRLSMDLFYAPLPHAGHPVIVANTQNAINSMA
Ga0370516_003832_5850_6458	F023603	N/A	MLYTTEDFVGQYRLDSNAITQADYQRAIDEHERALLEYFFELDSIEKIYAALPASPPAVGVRNVMRDLALPFIFGRIKMGVGSSMAGEPNTQGYTRIGYTPYLAWRGHETLRRLMRFAPFVIQTELLAPSATVPYPNPIPQAPDFVAVGDPVRAYTTTGEVQTSVVSVTATDITLGASLPAGPVRLIVENLRIRVSRAYLTF