Scaffold Ga0370516

Basic Information
Taxon OID	3300034696 Open in IMG/M
Scaffold ID	Ga0370516_003713 Open in IMG/M
Source Dataset Name	Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034696 Open in IMG/M

Scaffold ID

Ga0370516_003713 Open in IMG/M

Source Dataset Name

Hot spring water microbial communities from Yellowstone National Park, WY, United States - YNP_Buffalopool_103118

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6695
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6695

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Water → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5324	Long. (^o)	-110.7974	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5324

Long. (^o)

-110.7974

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370516_003713_1089_1376	F092976	GGAGG	MMTVQEILHWKQELRRVRQEFLQVWQKCPKCGAKWADIAWDAESDHEFLLVECRSGHLFRADEQFWLFDCDDYSDAGVYVPSEETEMTEVSAHAG
Ga0370516_003713_2854_3048	F088087	AGGTGG	MLKASDGSVWLPVTVSSAPCEICKRKSKSVVYECTKGKWAGVRVVACPEHAEQVIEQFIAGGEE
Ga0370516_003713_3048_3404	F080678	GGAGG	MFVRKVDAKTTPISEIYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0370516_003713_4339_4752	F100012	AGGAGG	MDREKVLQALKEAQAEYNIEDLDRFIKQAWEEVDIIDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFFKDPVYSWESRISFSARIKSADDAVDAVMSLAELIEQNLKSRAVE
Ga0370516_003713_4776_5219	F069506	GGAGG	MQLEQQTFTDEQIKQAIEEVWQELLQEADAEDYSFEEYLEHYRKYWDDPEFPNDIPEIIIRTVDKLIGKPLAWYCELVRDPSGFTGEYSFIAVDPQTRKCLTYRQFTFDGVNVHYFLSVAGTVIYYEDIIRLVIKLLDQIQSALADA
Ga0370516_003713_5297_5698	F086364	AGGAGG	MEREKIIAALETAFAEISGAKYEDEPETFAEFLESFKKFRDPETPVYWIPWTVEEAVEELTGRKFGWHEDAFKDEWNYTGEFGFICVDPETLRCLTAERTDDERCAVSVVFPILSIDDAVQAVEYFLQLVQQA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0370516_003713

Overview

Ecosystem & Geography

Associated Families

Sequences