NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0372840_194812

Scaffold Ga0372840_194812


Overview

Basic Information
Taxon OID3300034695 Open in IMG/M
Scaffold IDGa0372840_194812 Open in IMG/M
Source Dataset NameSeawater microbial communities from the Northeast subarctic Pacific Ocean - P26_June_2012_500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)603
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NamePacific Ocean: Gulf of Alaska
CoordinatesLat. (o)50.0Long. (o)-145.0Alt. (m)Depth (m)500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002380Metagenome566Y
F035968Metagenome171Y
F063764Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0372840_194812_170_364F063764N/AMSESLKYFRQKKGQWIWVYDMETNRRRKMELQLLLNRVNHTLRHENIMYFALEKERDKFRDQCK
Ga0372840_194812_2_130F035968AGGAMNTIKYNNKTIKLPFADADYSNPFEMETVSNPFSGESIAMPRF
Ga0372840_194812_361_516F002380GGAGMIASLLGILAGFILIMLGLILGVHSEHTTLGILIMFAGLVSMLNFLPYCNK

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.