NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325421_079831

Scaffold Ga0325421_079831


Overview

Basic Information
Taxon OID3300034689 Open in IMG/M
Scaffold IDGa0325421_079831 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-PdIQD-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1306
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011092Metagenome295Y
F026451Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0325421_079831_1134_1304F011092N/AMKPFLRKAWSFLRISRGAGHLILRPFLRKAWSFLIILRWTGHLILKPFLRKAWSFLR
Ga0325421_079831_661_900F026451GGAGLRGVGYLILKLFLRKAWSFLRILRWAGHVILRPFLRKAWSFLRILRWASHPILRSFLRKEWSFLKNFKRGGLADIETVS

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