NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334905_007951

Scaffold Ga0334905_007951


Overview

Basic Information
Taxon OID3300034687 Open in IMG/M
Scaffold IDGa0334905_007951 Open in IMG/M
Source Dataset NameSoil microbial communities from Mojave Desert, California, United States - 1NOC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1513
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012744Metagenome / Metatranscriptome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0334905_007951_94_834F012744GGALTRGTLFKNHVAKVYVFDRIRHGTALEILSRASAACRFESPHTAVSEHQWREYFGLPVMSVTAVANYYGLKISELEHHILKKTTYAGGLFESGMLVLRDAALESARQMGHTPERPQGCVLLPPRAVLSLCLSLPAVPAVAATVNALWEYVLAEKSNESTSVDWHYTCNQHVEIDCERIKNQLLTKCLAFAKKRKLYPYIQHFGHQNCSKAWASLFTYKGEFPPPRGSFYVERQDWFDRVSHISLWR

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