NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315300_108059

Scaffold Ga0315300_108059


Overview

Basic Information
Taxon OID3300034679 Open in IMG/M
Scaffold IDGa0315300_108059 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CB21_1000m_1099 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)547
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052640Metagenome / Metatranscriptome142N
F093997Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0315300_108059_13_399F093997N/ALPLTPKGTAAGDDVGAKVTVPRDPYPQGTQAGLDDDRNGEGKPASDKGGLKMQKKSDDTELIEKAEHTFSTETPRPNAALETVDKSIKDTSMILKDARAEGFEGLSTVARNILNGKYYVPSDDEVRGF
Ga0315300_108059_404_547F052640GAGGMVQIKTIDELEALYYGHNRNLLRKADAPVTTSTTGTFNAIFGAYAWAQ

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