Scaffold Ga0314782_001493

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0314782_001493

Scaffold Ga0314782_001493

Overview

Basic Information
Taxon OID	3300034661 Open in IMG/M
Scaffold ID	Ga0314782_001493 Open in IMG/M
Source Dataset Name	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2716
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From West Virginia University Organic Research Farm, Morgantown, Wv, United States

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6475	Long. (^o)	-79.9369	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035644	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0314782_001493_1529_2167	F035644	AGGAGG	MGLPNSSEDWALSEYVRSDYMTDSERDAEADIPVPDRLLPTRRYRELVGRLRLSQKIGLLIWLNREGLLTLGGKERLLYLQARASFEAIEAGLRFARRLTEEAKLQSDFQHQMRELNRRPQSKHFRQSQSRRIGVGYRDKGMLPEQSLRARRAAWEDSFIPTESIPRRLLDILRGFLPTAFTEDEEWVDLSVLLRTFGSKEGLRLETLLRPL
Ga0314782_001493_175_813	F035644	AGGAGG	MGLPRTSEDWSLSEYVHSDYMNDSERETEADIPVPDRLLPKQRYRELVERLRLSQKIGLLLWLNREGLLTIGGRERLLYLQAKASFEALEAGLKFARRLSTEQKLQSDFRHQMRELNRRPQSKHFRQTQQRRIGVGYRDKGMLPDPSQRARRGAQEDSFLRAETLPKKILEILTGHLPQSLTEDGEWVDLSVLLRAFGSESGQRLETLLRPL

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