Scaffold Ga0326751_009706

Overview

Basic Information

• Taxon OID: 3300034658
• Scaffold ID: Ga0326751_009706
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 524_CTD
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1178
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9626
  • Depth (m): 2427

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002330	Metagenome / Metatranscriptome	570	Y
F011970	Metagenome	285	Y
F044144	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326751_009706_2_313	F044144	N/A	TKEKKENLSSKFEKDSYRYDDDKITLEDCEEQIRTWAKALADQEIKRRPEGRQLAKLEIAKQDELDTIMESEAPAALIEKLEQKRQKVIGISWNTEPKAIEQQ
Ga0326751_009706_620_898	F011970	GGA	MPNNKKVWLVIEKNVYGESQSFTVSKHNASLDEAIKYKLALEKLNDKKNQSYFLASDVDTVLGNVITQHNESVYNGSYYKNHPEIKRPEETI
Ga0326751_009706_900_1178	F002330	N/A	QINKTLKIGDKFTIYYAPTFTKDGQDQTSIYDPHQYEVNVRYAIWTKDCKINKTGSLTYFDVEKNAYRTAIQTLQSIRIYLNKTMYVWKESK