Scaffold Ga0326748_045082

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326748_045082

Scaffold Ga0326748_045082

Overview

Basic Information
Taxon OID	3300034656 Open in IMG/M
Scaffold ID	Ga0326748_045082 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	619
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	13.3325	Long. (^o)	-44.9106	Alt. (m)		Depth (m)	2477
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001113	Metagenome	774	Y
F033078	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326748_045082_270_464	F001113	GGAGG	MSDIKLQGSNLFATFKTEKELKDYIEQHSKEEKRLLWLGVMFGGNYLAHQVNETFDLKYKKEKK
Ga0326748_045082_461_619	F033078	AGGAG	MKDWKEIKALPIYLQPKILSAVAYVNECAPNLNKSVERINILHSKLSEKEIMS

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