Scaffold Ga0326748_040411

Overview

Basic Information

• Taxon OID: 3300034656
• Scaffold ID: Ga0326748_040411
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 650
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.3325
  • Long. (^o): -44.9106
  • Depth (m): 2477

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057438	Metagenome	136	Y
F060029	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326748_040411_371_586	F057438	N/A	MKKFTIEVSHATTAQLSTIALELKIMSNGWTKHGPRITINGKPLEAPSLTMEVPSSKPQASSSRHEKDTIM
Ga0326748_040411_38_211	F060029	N/A	MDEESKCKAPEFIKKNERASTAWYEWQSRTGHQCIPGDFIAGNTVVYKKIKEDKVNA