Scaffold Ga0326748_017570

Overview

Basic Information

• Taxon OID: 3300034656
• Scaffold ID: Ga0326748_017570
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 951
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.3325
  • Long. (^o): -44.9106
  • Depth (m): 2477

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012032	Metagenome / Metatranscriptome	284	Y
F035080	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326748_017570_1_246	F035080	GGA	MPKKDLTTINNVDISPLVRELVEYSKSKNAIGDLEELVSKVPMGNSPDWKLISGVLCNSIVEWASQNRKEGKGLIQHLQSDI
Ga0326748_017570_410_679	F012032	AGGAG	MTKQEFKNEVGMGFFSCKWIKNNGQEAKVKRGILGQYAWRFTNNPIPTNTTEHERYVLAFRVGSGLLPEHRRWVNINPNTVFEVNRVAV