NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326748_016842

Scaffold Ga0326748_016842


Overview

Basic Information
Taxon OID3300034656 Open in IMG/M
Scaffold IDGa0326748_016842 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)968
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.3325Long. (o)-44.9106Alt. (m)Depth (m)2477
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002744Metagenome / Metatranscriptome533Y
F028523Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0326748_016842_3_656F002744N/AFRIQSDDVAVEPKKFVLPNINTGDGSFTSVQAPALLAYPINTPLAGGEHLNFYAQPLTSNIVAPGVGATVIYSTDGTNGAEQYYTRPSSATAGGTAINTRTTGGDMTIQGGNEITGLYTVVSGATATASQHTVGYSEFVSPDFNTSMPYRIAVQPTATALGSNANAETGGDGLMKYEMPRGQGIPLANNVTITNYYTNRDARTGADNFINFVRYSKN
Ga0326748_016842_657_968F028523N/AVAKMPHFNGEIQPSNVKSLAVYDVASYGTDLFLPLTDVGLTETALTFSTATVTRDTSNSNQPLDSFPRVYSDTDSGLLLNEGNNTIYNQTYTLDPDMTAIIYKI

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