NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326748_008356

Scaffold Ga0326748_008356


Overview

Basic Information
Taxon OID3300034656 Open in IMG/M
Scaffold IDGa0326748_008356 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1326
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.3325Long. (o)-44.9106Alt. (m)Depth (m)2477
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F002744Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0326748_008356_3_710F000704N/AVAKMPHVDRELQPSQVKSISVYDVANYGTDLFLPITDVGLTETALTFSTATLTRDTSNSNQPLDSFPRVYSDTDDGLLLNEADNTIYNQTYSFSPDMTAIIYKISLQFCACLTVSAYTSGNFSIGALHIKITERSTNDRLLYENTFQSGAANLTATGTSMHWFTQDIVETIKVRKGNPIDIQLDLITTTGSGTRQEGYATVAPLLKTAVMKQFYETGISLHLHPDLSHADGVYKYK
Ga0326748_008356_711_1325F002744N/AKKFVLPNINTGDGSFTSVQAPALLAYPINTPLNGGEHLNLYAQPLTTNTVAPGVGATIIYSTTGTNGAEQYYTRPTNESAGGTAAGTRTQGGDMTIMGGLEISALYTVVSGATALASQHDVGYSEFLSPDFKTSMPYRVAVQPTATALGSNANAVTGGDGIMKYEMPRGQGIPLEENVTVTNFYTNRDARTNASNFINFVRYTK

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