NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326748_007388

Scaffold Ga0326748_007388


Overview

Basic Information
Taxon OID3300034656 Open in IMG/M
Scaffold IDGa0326748_007388 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1402
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.3325Long. (o)-44.9106Alt. (m)Depth (m)2477
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009536Metagenome / Metatranscriptome316Y
F064794Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0326748_007388_1277_1402F064794N/AMKEQLLKLTQKITTWHEGMFKYITLKSKTSIFFTWLLVFICL
Ga0326748_007388_672_1280F009536N/AMQKEVMKQALDLMPGQLREEIKNNLDNTRSYTRLFVKIVEEINNMKVSLPKFTGLKNSILKINKQAHSKITDEIKYSVPKTQSTLSVKDIDHWLETAKKGDQLIYYTGRTLDHPKSVKEESVFRKAQNLAMDYDSVPFKNKKYEFRGSIRGEWGCNYKDIITLVQKKVAGLQRDKVWDEEKKKYVPGNIISYPIYNYIMIKI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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