NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326746_021657

Scaffold Ga0326746_021657


Overview

Basic Information
Taxon OID3300034655 Open in IMG/M
Scaffold IDGa0326746_021657 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.8216Long. (o)-44.9298Alt. (m)Depth (m)2800
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081216Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0326746_021657_278_478F081216GGGGGMKNDDFQVGDLVTLKHHRGNPDAPPPLAVVVSLAAYYLDRIQIQFFDTSGPEMAAPEHWIVVSHAK

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