Scaffold Ga0326746_018688

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326746_018688

Scaffold Ga0326746_018688

Overview

Basic Information
Taxon OID	3300034655 Open in IMG/M
Scaffold ID	Ga0326746_018688 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	685
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	14.8216	Long. (^o)	-44.9298	Alt. (m)		Depth (m)	2800
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001487	Metagenome	686	Y
F017656	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326746_018688_439_582	F017656	N/A	MNYFIHDERDLSPAYVKSCKKFLKEVSHKLQAASAMKQTQLKGRIKI
Ga0326746_018688_579_683	F001487	AGGA	MKKFTIEVSHASGPQLSTIALDLKIMSNGWAKHGP

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