Scaffold Ga0326746_007812

Overview

Basic Information

• Taxon OID: 3300034655
• Scaffold ID: Ga0326746_007812
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 976
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.8216
  • Long. (^o): -44.9298
  • Depth (m): 2800

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006792	Metagenome	364	Y
F082806	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326746_007812_448_777	F006792	N/A	MVKDKFSFGTNPSMREVPPGTEAKFSFNGLPTLIDTEWGQKYSFPIILISHDSYDSLPIKCNWESKSMVAKEIYEAYNKGDNKEFITAYEKSEWQLTRFDTGAYWLDQL
Ga0326746_007812_831_974	F082806	AGG	MAYNIKDVFYLSTSATIAAATANGGSAQLDLSAYIDPIARGRTKGTGL