Scaffold Ga0326741_022823

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_022823
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Balneolaeota → Balneolia → Balneolales → Balneolaceae → Balneola → unclassified Balneola → Balneola sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F056907	Metagenome	137	N
F074138	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_022823_2_484	F021867	N/A	AIRNIAHFSSLAVVGLKEYINKEDNIMDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDIANEPVEEKRQSKLMSEAQCKAIIKTESEGSKAFVKAMVHVDAEGLEDDDLEKVLQALKTGKITMDNLQASLDKIYTIKQSYK
Ga0326741_022823_490_945	F056907	N/A	MSGNAYYIPGDTGVGTKLPIGEYEATITALDVVDDVICGKFIADIFKPVYTVQHRDYPRTDIKDNGIFRYKEKPGYSYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKFDTMDGFKVVIEINYKNFVNESGNPVRYPVATLKKKIGEVPF
Ga0326741_022823_945_1106	F074138	GGAGG	MDWSQLYIHPSDDTTEDDIRDFVEWVSRKAERLGFRVELKLHQKVESTSSETVS