Scaffold Ga0326741_017505

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_017505
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1284
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F011291	Metagenome / Metatranscriptome	292	Y
F064626	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_017505_291_692	F004908	AGG	MERQEHQLTKKIVDLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSRLLELLSMGFRKTVENFKAGKATTSVGGEARFWVVVFQDYEVRLQTKTQIMEVVTEGHRHREDDDNARFERRNGNTEEQYTLE
Ga0326741_017505_37_315	F064626	GGA	MKELRKVTEKIKKVLIKAERSGEEFPWIVDQLSLIKMYDVGLPITMVLGLIDEFVEDVEERKRIKALEGFDKEHVQKVYDKVNIKWNDRNIN
Ga0326741_017505_965_1282	F011291	GGA	MDKYEINVWKDAELLTKEVVDFPSNEECYSYVTDKYYAPGTWTGSHQNKAGVTLNRPPMGIRITWSKKGNTHYKPKKLSAEEKKLQRDLYDSITPEVIEELGPNEM