Scaffold Ga0326741_012127

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_012127
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1599
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F002506	Metagenome	553	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_012127_259_564	F002506	GGAG	MTKEVITTKQTSMTNVDISPVITEVIEYAKDQATTTDIANLIASVPKTSSMDWKLVSGVIMNSLVEWVVENKDKNDVKSLALIQHLQKDVGYLLKRLGLAQ
Ga0326741_012127_823_1074	F000782	AGGAG	MTKTDFKSRVRGIFSVRWIKNDGTEGYVHRGILGLTKNIGAFLEHKEHNDYVLVYKIGNGYGEQRRWANVNPNTIIAINGVAQ