Scaffold Ga0326741_009340

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_009340
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1866
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F064796	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_009340_1209_1865	F064796	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSVPSIANALGLVNPLEIDVGGIPQIRVRLSDMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADNTEISITSEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSTTIPGGSTLMEDGTIQQVRIQGNGNTLFP
Ga0326741_009340_43_303	F040140	N/A	MPKFGKKFEDTGYDGSHHWKVLHEEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKALHPKDLDFALKHIVWSKKQLEPGLKCELC