Scaffold Ga0326741_008391

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_008391
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1991
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_008391_299_484	F000567	N/A	MKDQLLKLTKKITTWHERMFKYITLKSKTSIFFTWLLVFICLYEIFEHIVIPIFLIWWGF
Ga0326741_008391_3_302	F013896	GGTGG	MICDECNGNGFIIIKGETIQCKKCKSQGEIKETLTPPKYLDDDLTHVYQTLYEESLKLSTDNDPGMVAASLMAIGSRIYKTILTSDDYDNMMEKILKTDV
Ga0326741_008391_481_1092	F009536	N/A	MEKDMVMKQALDLMSGTLKEEIKNNLENPKSYTRIFVKICEEIDSMKVKIPKFTTLKNDILKINKETHSKITEQIKYSIPEAQSTLSVKDIERWLERAKKNDQLIYYTGRTLDHPKSVKEEAVFRKARNLAMDYDNIPFKGKKYQYRGSIRGEWGCNYKDIITLVQKKVANLQRDKIWDEEKKSYIPGNIISYPIYNYIMIKI