Scaffold Ga0326741

Basic Information
Taxon OID	3300034654 Open in IMG/M
Scaffold ID	Ga0326741_006425 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034654 Open in IMG/M

Scaffold ID

Ga0326741_006425 Open in IMG/M

Source Dataset Name

Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2321
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2321

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	13.5136	Long. (^o)	-44.9628	Alt. (m)	Depth (m)	2244
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean

Coordinates

Lat. (^o)

13.5136

Long. (^o)

-44.9628

Alt. (m)

Depth (m)

2244

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F001992	Metagenome	607	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_006425_1592_2293	F001606	N/A	MELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQALVANTVAPGVGCTVLYDTVSTNGVEQYYTRPTNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHTVGYSEFISPDFETSMPYRIAVQPTATGLGAAANAITGGGGLMQYNMPRGKGIPLANNVTITNYYTNRDARAGGADNFINFVRYSKN
Ga0326741_006425_478_861	F000730	GAG	LVNEFIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKEIAQQKANGVTDDQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0326741_006425_851_1591	F000704	N/A	VAKMPHENGEILPSNVKAVATYDIGSYGEDLWLPLTDVGLTETALTFSTATVTRDTSDSNQPVDTYPRVFSDTDSGLLLNEGNDTAFDQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLNIGGLHIKITERSTNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETLKVNKGNPIDIQLNLVTVVTGTNTRQEGYAPVAPLLKTAVMKPFFESGISLHLHPDLSHADGVFKYKKDRVSMLGQ
Ga0326741_006425_9_476	F001992	AGG	LVVQKLLLQEGLRQTKKYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGWNGVAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATSQAVFLVIALALSLMVFPQTIQKFKEMRILQQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326741_006425

Overview

Ecosystem & Geography

Associated Families

Sequences