Scaffold Ga0326741_004792

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_004792
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2744
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012032	Metagenome / Metatranscriptome	284	Y
F012880	Metagenome	276	Y
F016013	Metagenome	250	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_004792_1762_2049	F016013	GGAG	MPKDIIPIKSVNAVDISPLLREVIEYTKDQNAVGDLEALISKVPNKDSLDWKLISGVLCNAIIEWIAKDTSNRKDLLVHLQSEVGYLLQRMGLTM
Ga0326741_004792_2049_2222	F012880	GAG	MKFNTITLIWSIALMLLTFNICLLWIDWQFTNTLVYKFTLILNGFMFGLVMFDWSKN
Ga0326741_004792_2219_2494	F012032	AGGA	MTKQEFKTTVGIGFFSCKWIKNNGQVAKIKRGILGQYAWRFTHDPIANKDNFQEHDDYVLAFRVGAGLLPEHARWASINPNTVFDINRVAV