Scaffold Ga0326741_002314

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_002314
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4148
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066859	Metagenome / Metatranscriptome	126	N
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_002314_3_740	F078831	N/A	SIANALGLVNPLEIDVGGIPQIRVRLSDMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADNTEISITSEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSTTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDIMAGVNAEAIRTVQMQQVPFRGR
Ga0326741_002314_746_1000	F066859	AGG	MVHELPDENGRVQTRINTSRAGYYVSNFDTAESVTLTPQGGGTIDIVLPPGAKVSIPDKIGMVAQGGNSSRNYVFLMWTAGFAN