Scaffold Ga0326741_002234

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_002234
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4214
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002667	Metagenome	539	Y
F017252	Metagenome	242	Y
F060453	Metagenome	133	N
F075462	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_002234_1740_1994	F060453	N/A	MAFKLKTGKTINKLLAGAGIVALGTIGLNAVAPGLMQGTIGKVILPAVSFGVAGLEGVAGAVVTEFAGHYSGSRALDNTLTESL
Ga0326741_002234_2810_3271	F002667	N/A	MEELLSSALILVASISAGISCMFVARSRSVTNKHSRQRIKDFENDIKYLADRKKEGDAEHALELKRLNGAVNRLKNGNAVTDADMKNSGLGEIILQLIPNKYRKAASFLVPQVEEAVKKDPAIVERIYEKIKSANTNNKQAEPGSQSETVQTL
Ga0326741_002234_3534_3749	F075462	N/A	MTLDPDYITKAERERRRHLEHKETKVAKTISIPISYWALLDQVKNKLGKKNVNETLMYCIKEIGIEEGIES
Ga0326741_002234_985_1353	F017252	N/A	LPQVIQGYQVNVKPSDTTAESTYVSDIVVAGAGATTIHYPSQYRCYAISAAIKNQDAANACTFSINGQPGITLSAGSDQNINNQSIVSIQVTPGAAGTTDILAQVTPIYVSTEAQRFRTDRG