Scaffold Ga0326741_002040

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_002040
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4411
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F004658	Metagenome	429	Y
F043153	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_002040_2944_3300	F001712	N/A	MSASAGQPIGARAQNFGNSLLGRISGYTPFKNAPGANTPQTIGIDGIFNKWSGIGLGSFVYGMLPVKMLPHKGKAKTLGKSLLTAGILSGIFMPTNTHSNLISPSRAITVSSSEVSYT
Ga0326741_002040_3297_4124	F001606	GAGG	MTYGYDDVTFTSIGTGVTETQLNSGTSLSAPDPAHGFNAVVPYQMELGAFTPDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFASVQAPALLAYPINTPLAGGEHLNFYAQPLVANTVAPGCGATVIYNTSGTNGDEQYYTRPTNETAAGTAINTRTTGGDMTIQGGNEITALYTVVSGATATASQHDVGYSEFVSPDFNTSMPYRVAVQPTATGLGAAAGAATGGGGIMQYNMPRGQGIPLANNVTITNYYTNRDLRTGASNFINFVRYTK
Ga0326741_002040_4138_4410	F043153	AGGTGG	MPHVNGEIQPSQVKSLAVYDVGSYGEDLFLPLTDVGLTETALTFSTATVTRDTSNSNQPVDTYPRVFSDTDSGLLLNEGNNTIYNQTYTLD
Ga0326741_002040_831_974	F004658	AGGA	MPEYLKKVYEFFKTNNTAKDVLIGSVSFIAGGFVLDRILRRDEDEDE