Scaffold Ga0326741_001557

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_001557
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5129
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F004908	Metagenome / Metatranscriptome	419	Y
F011291	Metagenome / Metatranscriptome	292	Y
F012880	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_001557_4624_4797	F012880	N/A	MKFNIITLIWSIALMLLTFQVCLLWIDWEFTNTIVYKFALLLDGFMFGMVMFDWSHR
Ga0326741_001557_4794_5039	F000782	GAGG	MTKQQFKSSVKGIFSVRWLKNDGSERYLHRCILGLNKKVEGQPFEHNDYVLVYKIGNGYGEQRRWGNVNPNTITQINGVAV
Ga0326741_001557_739_1122	F011291	GGA	MDKYEINVWKDAELLSKEIVDFASNEECYNYVLEKYHAPGTWTAAHQNVHGITLNRPPVGIRVTWAKKGNNYYKPMKLTAEEKKLQRALYDSITPEEIPELGRNEMLAKVRKDYYGHPDAKGYEEKK
Ga0326741_001557_86_466	F004908	AGGA	MATLKITDMFQVDDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSRLLELLSMGFRKTVENFKAGKATTTQGGEARFWVVVFQDYEVRLQTKSQIMDVVTEGHRHRDDEDNAKFERKNGTEEQFTLD