Scaffold Ga0326741_001007

Overview

Basic Information

• Taxon OID: 3300034654
• Scaffold ID: Ga0326741_001007
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6551
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 13.5136
  • Long. (^o): -44.9628
  • Depth (m): 2244

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F001922	Metagenome	617	Y
F003616	Metagenome	477	Y
F021317	Metagenome / Metatranscriptome	219	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_001007_150_629	F001922	GGA	MIQKLLVEEGMKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINSYFQATIQGGIWLNSLAGFFGLNFPTTLPEWTTKLFTTGFHNITFWQIVQVISVLIVVMEYMQYDRMLKEKQEKPNITTGAVFAMIGLGLSLITFPQIIQKVKEMRILNES
Ga0326741_001007_2012_2236	F003616	AGG	MIWSEKLGHEIGTYNSLGGMRINAKPFIHSTLNTTVTCRICKGTGLNAITHQSGLVTLNPCVLCKGVKRRSNRL
Ga0326741_001007_34_153	F021317	GAG	MKGIYQKKQMLELVTNNAEVINIIGKPIIKKLLGFVKSI
Ga0326741_001007_5375_5731	F001712	AGG	MSASAGQPIGARAQNFGNSLLGRISGYTPFKNAAGANTPQTIGIDGIFNKWSGIGLGSVVYGMLPIKQLPHKGKAKTLGKSLLTAGILSGIFMPTNTHSNLISPSRAITVSSSEVSYT
Ga0326741_001007_5728_6549	F001606	GAGG	MTYGYDDVTTTSLGTGVAETQLNTATSLSAPDPAHAFLACIPYQSESAAFTPDQSLLTAFRIQSDDVAVEPKKFVLPNVNTGDAAFAQVSAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTESTNGAEQYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPTYTGLGSAAGASTGGGGLMQYNMPRGKGIPLANNVTISNYYTNRDARTGASNFINFVRYS