Scaffold Ga0316599_064522

Overview

Basic Information

• Taxon OID: 3300034653
• Scaffold ID: Ga0316599_064522
• Source Dataset Name: Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_03R_16 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 939
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified ssDNA viruses → Circovirus-like genome RW-C (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9141
  • Long. (^o): -147.8344
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052619	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316599_064522_260_790	F052619	N/A	MNCPVYRPVYKFTRTIEQAFDVTCDGISPALYGFYFTLGQLPGYTDFTNLFDMYRLAKIEIDWMPEYTELTDAALVSNAINVRFNSAIDISDDSNPTTVDELLQYQQVVSTGITQPHKRSFVPCFLMGGNVPCNCWLPTTSSDVRHFSVKVAIPPTGAAMTFRSRVKFYVECANVN