Scaffold Ga0372973_034288

Overview

Basic Information

• Taxon OID: 3300034650
• Scaffold ID: Ga0372973_034288
• Source Dataset Name: Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1600_MSt12 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 758
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002229	Metagenome / Metatranscriptome	580	Y
F002795	Metagenome / Metatranscriptome	529	Y
F059548	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0372973_034288_1_285	F002229	N/A	AEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACVPTEVRALCGDGCADDEDEEGGDGDG
Ga0372973_034288_236_550	F002795	N/A	MVVRMMRMRRVAMATDSGLVLRGMVAAYREFVSRRDGKLYRVVTVFGDLVAGGTVLCAVDGYDVFVDSPGYTRGEMVELPARLQFVRDASGRPVVRLYVDEGVR
Ga0372973_034288_550_756	F059548	AGGAG	MPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDASPIVLRSAYVQANR