Scaffold Ga0372972_005359

Overview

Basic Information

• Taxon OID: 3300034649
• Scaffold ID: Ga0372972_005359
• Source Dataset Name: Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1400_MSt11 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2589
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F009403	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0372972_005359_160_513	F000855	GAGG	MDWLEDAISKIVGWLDQISAAVHNAIIGWINGLIDIWNGWMDSLLHPAQAMPSIPALRWVVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS
Ga0372972_005359_1763_2068	F009403	AGG	VFRITRHGRGSGRAPALSVIRSADGARLEVREGRYGQGACYAYCDVDDTLAAHTLLLTFADMRARDIYIHTDIPVISERKFFDAFGSGSVLPDSLPDPLRA
Ga0372972_005359_2_160	F001381	GAG	MRYVIATLYVLVWLALAALAALVLPIWALPAALVQLSVAYVMLRSWLTAAGGD