Scaffold Ga0372970_017877

Overview

Basic Information

• Taxon OID: 3300034648
• Scaffold ID: Ga0372970_017877
• Source Dataset Name: Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1222
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050401	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0372970_017877_34_825	F050401	GGGGG	MKWFTRMFTLPKRYNSLSDIARDPLGAVLNTAQWAVPLAMGLPNGFASLPKLLSNPSLLAKWSLGNAPQLFGAKNPITAQSVMNWFKKPENLALVAGGLSYLDQSRRAKRASAQLDMFRQQQSGLSGLERMFNTQLLNRRMNAVGTVLNPAFAIAQLRAMETDTANRARRMMDTAGVQSQRSVENALARTAGELARQRALIPLQYAQATFGIPLGMQYTSLVGSLLGQQRADELLAMQQLIPALLQLYAYTRGITPTQTTGGN