Basic Information | |
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Taxon OID | 3300034648 Open in IMG/M |
Scaffold ID | Ga0372970_015110 Open in IMG/M |
Source Dataset Name | Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1379 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002970 | Metagenome / Metatranscriptome | 517 | N |
F005302 | Metagenome / Metatranscriptome | 405 | Y |
F064295 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0372970_015110_1133_1378 | F064295 | AGGAGG | MEKIPAEIYDIDAIRVDRSALTIREAAKVLNRELTAPVIARLVRKAIGDQADQFPLRALKAVYERILPQIFEPDDAIRSRVE |
Ga0372970_015110_148_609 | F002970 | GGAG | MSYSTVVDIIELLANLAIQYNNVVVPVQRLASQSNWSDTAQLPTRIIPVLGGLRLIEGGVYTATRATRAVWEIDDLLLVRDVGMGRGVADTATALVEYVEDYIAKLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVTMTVRFAHLVRAPSA |
Ga0372970_015110_619_1122 | F005302 | AGGAGG | MSHTGVIDGLFAGNFAVEISTNGTAWTAVSNATVKIDDIELSRPSGEAYVGGSSDYATVTIGKREPVEITLTFLYSEAANSAANTVFDAFQSANPRLGVRWSPRGLVSGARAYATSNDGTTFGLGVITGVTHHALDPSDPEPYVAMVTVRAPAIRQYTLAANPTNLA |
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