Scaffold Ga0372968_006780

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0372968_006780

Scaffold Ga0372968_006780

Overview

Basic Information
Taxon OID	3300034647 Open in IMG/M
Scaffold ID	Ga0372968_006780 Open in IMG/M
Source Dataset Name	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0600_MSt7 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1935
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5387	Long. (^o)	-110.798	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022604	Metagenome / Metatranscriptome	213	N
F098402	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0372968_006780_1288_1935	F098402	N/A	VTDGSVTVNHNDAVVEELGRSVSDLIVVSQRHAEGEIELQTTYEDILYGLFGLFGPVAPSGGSRTFNAPITAYAAPQIYTMEYGTTGAEYRVVGSIIREWTLRYEANAGVTESWSFIGRSVQATALTGSLPTRVVTPVLSRHASWFVDPTGTAHGTTPVPGTVIEAELSINTNRHLKMFEGAQPLDWGEGRWEAQLTLTAEFNATAKAWVDALITN
Ga0372968_006780_616_1026	F022604	GAGG	MLSAVNAVNAVVAAVPGIVSSYTTVPMSANTPALPMALVTPISENRRQHAHELVRIETLVRVRIVHSPIAQGVTTSQQSALYALADAVMTALTDDITLGGQVDHVASVDADEPSIYTLAGTDYLSISIAVRVIEKI

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