Scaffold Ga0372965_019144

Overview

Basic Information

• Taxon OID: 3300034646
• Scaffold ID: Ga0372965_019144
• Source Dataset Name: Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0000_MSt4 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1051
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F007976	Metagenome / Metatranscriptome	341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0372965_019144_2_298	F002982	N/A	AICAVLTEPGECDRIINVARPSDAFDVFALDINAAAFTPLDTLFSLPRVVLVEIERRAEGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0372965_019144_358_1041	F007976	AGGA	MPSSELAHFLRTAIDIQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLAALAEATWIGSIEVNDNRVTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDAHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFSDQWGYTFAITPFVKRN