NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0371491_146546

Scaffold Ga0371491_146546


Overview

Basic Information
Taxon OID3300034645 Open in IMG/M
Scaffold IDGa0371491_146546 Open in IMG/M
Source Dataset NameMetatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1766 RNA GHGlow gp2 (Metagenome Metatranscriptome) (NovaSeq)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)598
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014928Metagenome / Metatranscriptome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0371491_146546_1_597F014928N/AEIQPVVHQEFQPVITTNIQPVINQKIQPVIHKEIQPVIHQNIQPVITTQIQPVIKEEIQPVIHKEIQPVIHQNIQPVITRQIQPVIKEEIQPVIHKEIQPIVHQNIQPVITTQIQPVITKQIQPVIHKEIQPIIHQEIQPVITTEVQPIIQKEITPVVHKQIQKIIHQEIQPVIIKRVQQIIHQEITPVVHKEIQPIIQ
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Institute for Fundamental Biomedical Research
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