NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326756_048601

Scaffold Ga0326756_048601


Overview

Basic Information
Taxon OID3300034629 Open in IMG/M
Scaffold IDGa0326756_048601 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)526
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2600
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004769Metagenome / Metatranscriptome424Y
F032720Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0326756_048601_1_234F004769GAGGMPSGFTRNPIRVQVEVDGYTWRVHGARTNRRWHCHLVELVGPLPLDGPVTQPLRDKIRTALAEALKLDESEIARIPAD
Ga0326756_048601_234_491F032720GAGGMIIPDYQVGQFVRLKPFKGGSKDVRCVCDPDKKSGLQAPAITAPELGGCWHGVGTTVLRVFLDGGLLLKNRHGFVRGARPDEVCR

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.