Scaffold Ga0326756_033830

Overview

Basic Information

• Taxon OID: 3300034629
• Scaffold ID: Ga0326756_033830
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 619
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F009404	Metagenome / Metatranscriptome	318	Y
F060967	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326756_033830_254_415	F009404	AGGAG	MSDEVEIIQPKGEALVKHCPICGVEFDETVLTNRWLKCDSCETIFQVKVKTGE
Ga0326756_033830_436_618	F060967	N/A	MNKSRVARDLWRKVFNDNLINLSDSDARKQVVSEFLNDPVNKKSGWHKKDSRFLRVGFQK
Ga0326756_033830_70_261	F005148	GGAG	MKQKKYEEFLKRNLPESEEVECKKCERKYFDEWNLLSLASLDMCMLCANRNLDKQTIKEKYHE