Scaffold Ga0326756_026033

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326756_026033

Scaffold Ga0326756_026033

Overview

Basic Information
Taxon OID	3300034629 Open in IMG/M
Scaffold ID	Ga0326756_026033 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	695
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	14.7528	Long. (^o)	-44.9788	Alt. (m)		Depth (m)	2600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012032	Metagenome / Metatranscriptome	284	Y
F012880	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326756_026033_253_528	F012032	AGG	MTKQELKTTVGMGFFSAKWIKNNGQVGKVKRAILGQYAWRFTHDPQANKENFQEHNDYVLAFRVGSGLLPDHARWVNINPNTVFEVNRVAV
Ga0326756_026033_525_695	F012880	GAG	MKFNIVTFIWSTALVLLTFQFCLLWIDWGFTNTIAYKFMLLLDGFMFGMVMMDWSKN

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