Scaffold Ga0326756_020861

Overview

Basic Information

• Taxon OID: 3300034629
• Scaffold ID: Ga0326756_020861
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 767
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026399	Metagenome	198	Y
F055183	Metagenome	139	N
F075323	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326756_020861_180_407	F075323	AGGAGG	MFKNVKIIHTEVEDGKYNDEKQKYIKYKRPKTIVKTVFDDDFVGDIGELYEAIKFHADKNHSGTLEVKLKPEVQY
Ga0326756_020861_419_631	F055183	AGGAGG	MDNCIIQLEVDHCAKSGCSGPSVTNVGVFKNERHAKRFMRNDKDFRKIFKASNIKKNILPIAIWAIPGAK
Ga0326756_020861_631_765	F026399	AGGAG	MTDVPILDKGIDDWGEDEQEEAYDKLQQLKHDFEGTPTKLYINRD