Scaffold Ga0326756_003240

Overview

Basic Information

• Taxon OID: 3300034629
• Scaffold ID: Ga0326756_003240
• Source Dataset Name: Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2032
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): 14.7528
  • Long. (^o): -44.9788
  • Depth (m): 2600

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002744	Metagenome / Metatranscriptome	533	Y
F003617	Metagenome / Metatranscriptome	477	Y
F060030	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326756_003240_1448_2032	F002744	N/A	AAFTSVAAPALLAYPINTPLAGGEHLNFYAEPLTSNVVAAGVGATVIYDTDGTNGAEQYYTRPTNENASSTTINTRTQGGDMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRVAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYFTNRDARAGGASNFINFVRYSKN
Ga0326756_003240_3_356	F060030	GGA	MVIQKLLIEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGGFFNMKFPTTLPEWLTQLFTTGYKGFTFWNLVTTISVLIIVVEAMQYDSLSL
Ga0326756_003240_729_1181	F003617	N/A	MTAIIYKISLNFCAVLTCSAYTNGGLSLGGLHIKITERSTNARLLYENTFQSGAATLGATGTQMHWFTQDIVETIKINKGNPVDIQLDLVTVVTGSNTRQEGYAPVAPLLKTAVMKPFFESGMSLHLHPDLSHADGVFKYKKDRVSMLGQ