Scaffold Ga0326755_005520

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0326755_005520

Scaffold Ga0326755_005520

Overview

Basic Information
Taxon OID	3300034628 Open in IMG/M
Scaffold ID	Ga0326755_005520 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1201
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	14.7528	Long. (^o)	-44.9788	Alt. (m)		Depth (m)	2961
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F088726	Metagenome	109	Y
F103082	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326755_005520_567_797	F103082	GAG	MKNPAGTRKKKRPTVKQLAGDVENIWNGMMYLDRNLTTIQRFFEEYLIMKDEVEPFLKHFEGRVESAKESKEHKKG
Ga0326755_005520_794_997	F088726	GGAGG	MNKQDIIGHALIKFSEAEIDLILSALYNTEKIDIPRVESNWKRPYTNLIKELLHIKETLEREKEKQS

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.